Salk Institute

Papers and research supported in part or in whole by The Swartz Foundation

 

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Lima Dias Pinto I, Rungratsameetaweemana N, Flaherty K, Periyannan A, Meghdadi A, Richard C, Berka C, Bansal K, Garcia JO
"Intermittent brain network reconfigurations and the resistance to social media influence," Network Neurosci. 2022 Jul 1;6(3):870-896.


Rungratsameetaweemana N, Lainscsek C, Cash SS, Garcia JO, Sejnowski TJ, Bansal K
"Brain network dynamics codify heterogeneity in seizure evolution," Brain Commun. 2022 Sep 16;4(5):fcac234.


Rungratsameetaweemana N
"Understanding motor abnormalities in psychiatric disorders as altered sensorimotor processing," Biological Psychiatry: Global Open Science, 2021


Lainscsek C∗, Rungratsameetaweemana N∗, Cash SS, Sejnowski TJ
"Cortical chimera states predict epileptic seizures," Chaos: An Interdisciplinary Journal of Nonlinear Science, 29: 121106, 2019.


Garcia, J. W. , Bartol, T. M. , Sejnowski, T. J.
Multiscale modeling of presynaptic dynamics from molecular to mesoscale, PLOS Comput Biol., 18(5): e1010068 (2022).


Davis, Z. W., Benigno, G. B, Fletterman, C., Desbordes, T., Steward, C., Sejnowski, T. J., Reynolds, J. H., Muller, L.
Spontaneous traveling waves naturally emerge from horizontal fiber time delays and travel through locally asynchronous-irregular states, Nature Communications, 12, 605 (2021).


Nakahira, Y., Liu, Q., Sejnowski, T. J., Doyle, J. C.
Diversity-enabled sweet spots in layered architectures and speed-accuracy trade-offs in sensorimotor control, Proceedings of the National Academy of Sciences U.S.A., 118: e1916367118, 2021.


Davis, Z. W. Muller, L. Martinez-Trujillo, J. Sejnowski, T. J. Reynolds, J. H.
Spontaneous travelling cortical waves gate perception in behaving primates, Nature, 587, 432-436, 2020.


Das, A. Cash, S. Sejnowski, T. J.
Heterogeneity of Preictal Dynamics in Human Epileptic Seizures, IEEE Access, 52738, 2020.


Bazhenov M, Huerta R and Rabinovich M (1996) Bifurcations inside Synchronization Regime of Coupled Chaotic Neurons in CPG. In: Proceedings of The 3rd Joint Symposium on Neural Computation. University of California San Diego and California Institute of Technology, 6, 172-179. Bazhenov_Huerta_Rabinovich_3rdSympNeuralComp_1996.pdf

 

Bazhenov M, Huerta R, Rabinovich M and Sejnowski TJ (1998) Cooperative behavior of a chain of synaptically coupled chaotic neurons. Physica D, 116,  392-400. 

Bazhenov_etal_PhysicaD1998.pdf

 

Bazhenov M, Stopfer M, Rabinovich M, Abarbanel HDI, Sejnowski TJ and Laurent G (1999).   Network model for the odor-specific temporal patterns in locust olfactory interneurons.  Proceedings of the the 6th Joint Symposium on Neural Computation. University of California San Diego, University of  Southern California and California Institute of Technology, 9, 16-23.

Bazhenov_etal_Proc6rhJointSympNeuralComp_1999.pdf

 

Bazhenov M, Stopfer M, Rabinovich M, Huerta R, Abarbanel HDI,  Sejnowski TJ  and Laurent G  (2001). Model of transient oscillatory synchronization in the locust antennal lobe. Neuron, 30, 553-67.

Bazhenov_etal_Neuron_2001.pdf

 

Bazhenov M, Timofeev I, Steriade M and Sejnowski TJ (1997).  Cellular mechanisms underlying thalamic augmenting responses during 10 Hz stimulation. Proceedings of the The 4th Joint Symposium on Neural Computation. University of California, San Diego and University of Southern California, 7, 11-18. 

Bazhenov_etal_Proc4thJointSympNeuralComp_1997.pdf

 

Bazhenov M, Timofeev I, Steriade M and Sejnowski TJ (1998).  Cellular and network models for intrathalamic augmenting responses during 10 Hz stimulation. Journal Neurophysiology, 79, 2730-2748.

Bazhenov_etal_JNeurophysiol_1998.pdf

 

Bazhenov M, Timofeev I, Steriade M and Sejnowski TJ (1998). Computational models of thalamocortical augmenting responses.  Journal of Neuroscience, 18 (16),  6444-6465.

Bazhenov_JNeurosci_1998.pdf

 

Bazhenov M, Timofeev I, Steriade M and Sejnowski TJ (1998).  Spontaneous spatio-temporal patterns of activity in thalamic reticular nucleus. Proceedings of the 5th Joint Symposium on Neural Computation. University of California, San Diego, University of Southern California and California Institute of Technology, 8, 1-8.

Bazhenov_etal_Proc5thJointSympNeuralComp_1998.pdf

 

Bazhenov M, Timofeev I, Steriade M and Sejnowski TJ (1999).  Self-sustained rhythmic activity in the thalamic reticular nucleus mediated by depolarizing GABAa receptor potentials. Nature Neuroscience, 2(2), 168-174. 

Bazhenov_etal_NatNeurosci_1999.pdf

 

Bazhenov M, Timofeev I, Steriade M and Sejnowski TJ (2000).  Spiking-bursting activity in the thalamic reticular nucleus initiates sequences of spindle oscillations in thalamic networks.  Journal of Neurophysiology, 84, 1076-1087. 

Bazhenov_etal_JNeurophysiol_2000.pdf

 

Bulsara A and Zador A (1996). Threshold detection of wideband signals: A noise-induced maximum in the mutual information. Phys Rev. E, 54:2185-88.

Bulsara_Zador_PhysicalReviewE_1996.pdf

 

Bura�as GT and Albright TD (1996).  Contribution of area MT to perception of three-dimensional shape: A computational study.  Vision Res., 36, 869-887. 

Buracas_Albright_VisionRes1996.pdf

 

Bura�as GT and Albright TD (1999).  Covert Visual Search:  A comparison of performance by humans and macaques,  Behav. Neurosci., 113, 451-464.

Buracas_Albright_BehNeurosci_1999.pdf

 

Bura�as GT and Albright TD  (1999).  Estimation of information in neuronal responses  Reply, Trends Neurosci., 22, 543-543. 

Buracas_Albright_ReplyTINS_1999.pdf

 

Bura�as GT and Albright TD (1999). Gauging sensory representations in the brain. Trends Neurosci., 22, 303-309. 

Buracas1999_TINS_Gaging.pdf

 

Bura�as G T,  Albright TD and Sejnowski J (1996) Varieties of attention: A model of visual search.  Proc. 3rd Joint Symposium on Neural Computation, 6, 11-25.  Buracas_Albright_Sejnowski_Proc3rdJointSympNeuralComp_1996.pdf

 

Bura�as GT, Zador  A, DeWeese M and  Albright TD (1998). Efficient discrimination of temporal patterns by motion-sensitive neurons in primate visual cortex. Neuron, 20 (5), 959-969. 

Buracas_etal_Neuron_1998.pdf

 

Chklovskii DB (2000).  Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1).  Vision Research, 40: 1765-1773. 

Chklovskii_VisionRes_2000.pdf

 

Chklovskii DB (2000).  Optimal sizes of dendritic and axonal arbors. In S.A. Solla, T.K. Leen, K.R. M�ller, Advances in Neural Information Processing Systems.

Chklovskii_AdvNeuralInfoProcessSys_2000.pdf

 

Chklovskii DB (2000).  Optimal sizes of dendritic and axonal arbors in a topographic projection.  Journal of Neurophysiology, 83:2113-2119. 

Chklovskii_JNeurophysiol_2000.pdf

 

Chklovskii DB   (2000).  Optimal sizes of dendritic and axonal arbors.  In S.A. Solla, T.K. Leen, K.R. M�ller, Advances in Neural Information Processing Systems, 12, 108-114.

Chklovskii_AdvNeuralInfoProcessSys_P108_2000.pdf

 

Chklovskii DB and Koulakov AA (2000).   A wire length minimization approach to ocular dominance patterns in mammalian visual cortex. Physica A, 284, 318-334.

Chklovskii_Koulakov_PhysicaA_2000.pdf

 

Chklovskii DB, and Stevens CF (2000).   Wiring optimization in the brain.  In S.A. Solla, T.K. Leen, K.R. M�ller, Advances in Neural Information Processing Systems, 12, 103-107.

Chklovskii_Stevens_AdvNeuralInfoProcessSys_2000.pdf

 

deCharms C and Zador A (2000). Representations and the Cortical Code.   Ann. Rev. of Neurosci., 23, 613-647.

deCharms_Zador AnnRevNEurosci_2000.pdf

 

DeWeese M (1996).  Optimization principles for the neural code.  Network, 7, 325.

DeWeese_NetworkCmpNeuralSys_1996.pdf

 

DeWeese M (1996). Optimization principles for the neural code. In Advances in Neural Information Processing Systems, Cambridge, MA: MIT Press., 8, 281.

DeWeese_AdvNeuralInfoProcessSys8_1996.pdf

 

DeWeese M and Meister M (1999).  How to measure the information gained from one symbol,  Network, 10, 4, 325-240.

DeWeese_Meister_Network_1999.pdf

 

DeWeese M and Zador A (1998).  Asymmetric dynamics in optimal variance adaptation.  Neural Computation, 10, 1179.

DeWeese_Zador_Neuralcomp_1998.pdf

 

Eagleman DM and Sejnowski TJ   (2000). Motion integration and postdiction in visual awareness. Science, 287(5460): 2036-8.

Eagleman_Sejnowski_Science_2000.pdf

 

Escalona J, Jos� JV and Tiesinga PHE. (2002) Entrainment, Arnold tongues, and duality in a periodically driven Integrate-and-Fire model, Neurocomputing 44-46, 195-200.

Escalona_Jose_Tiesinga_Neurocomp_2002.pdf

 

Espeseth A, Marnellos G, and Kintner C (1998).  The role of F-cadherin  in localizing cells during neural tube formation in Xenopus embryos.  Development, 125:301-312. 

Espeseth_Marnellos_Kintner_Development_1998.pdf

 

Fellous J-M, Houweling AR, Modi RH, Rao RPN, Tiesinga, PHE and Sejnowski TJ (2001).  Frequency dependence of spike timing reliability in cortical pyramidal cells and interneurons, J Neurophysiology, 85, 1782 - 1787.

Fellous_etal_JNeurophysiol_2001.pdf

 

Fellous J-M, Tiesinga PHE, Jos� JV and Sejnowski. TJ. (2001). Computational model of carbachol-induced delta, theta, and gamma-like oscillations in the hippocampus, Neurocomputing, 38-40, 587-593.

Fellous_Tiesinga_Jose_Sejnowski_Neurocomp_2001.pdf

 

Fellous J-M, Tiesinga, PHE, Thomas PJ and Sejnowski TJ (2004). Discovering Spike Patterns in Neuronal Responses, The Journal of Neuroscience, 24(12) 2989-3001.

Fellous_etal_JNeurosci_2004.pdf

 

Gongora A, Jos� JV,  Schaffner S and Tiesinga PHE  (2000). Quantum and classical solutions for a free particle in wedge billiards, Physics Letters A 274, 117-122.

Gongora_etal_PhysicsLetA_2000.pdf

 

Goodhill GJ  (1997).  Diffusion in axon guidance. European Journal of Neuroscience, 9, 1414-1421.

Goodhill_EurJNeurosci_1997.pdf

 

Goodhill GJ and Baier H (1998). Axon guidance: stretching gradients to the limit. Neural Computation, 10, 521-527. 

Goodhill_Baier_NeuralComp_1998.pdf

 

Goodhill GJ, Bates KR and Montague  PR (1997).  Influences on the global structure of cortical maps.  Proceedings of the Royal Society, Series B, 264, 649-655.

Goodhill_Bates_Montague_ProcRoyalSocLondB_1997.pdf

 

Goodhill G J, Finch S and Sejnowski T J (1995). Quantifying neighbourhood preservation in topographic mappings. Institute for Neural Computation Technical Report Series, No. INC-9505, November 1995.  Goodhill_Finch_Sejnowski_InstNeuralComp_1995.pdf

 

Goodhill GJ, Finch S and Sejnowski T J (1995). A unifying measure for neighbourhood preservation in topographic mappings. In: Proceedings of the 2rd Joint Symposium on Neural Computation, University of California, San Diego and California Institute of Technology, 5, Institute for Neural Computation, La Jolla, CA 191-202. 

Goodhill_Finch_Sejnowski_ConfProc_1995.pdf

 

Goodhill GJ, Finch S and Sejnowski T J (1996).  Optimizing cortical mappings. Advances in Neural Information Processing Systems, 8, eds. David S. Touretzky, Michael C. Mozer and Michael E. Hasselmo, MIT Press: Cambridge, MA, 330-336.  Goodhill_Finch_Sejnowski_AdvNeuralInfoProcessSystems_1996.pdf

 

Goodhill GJ and Sejnowski T J (1996).  Quantifying neighbourhood preservation in topographic mappings.  In: Proceedings of the 3rd Joint Symposium on Neural Computation, University of California, San Diego and California Institute of Technology, 6, Pasadena, CA: California Institute of Technology, 61-82. 

Goodhill_Sejnowski_Proc3rdJointSymNeuralComp_1996.pdf

 

Goodhill GJ and Sejnowski TJ (1997). A unifying objective function for topographic mappings.  Neural Computation, 9, 1291-1304. 

Goodhill_Sejnowski_NeuralComp_1997.pdf

 

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